diff --git a/bin/omarchy-hyprland-flag-missing b/bin/omarchy-hyprland-flag-missing
new file mode 100755
index 00000000..e99c6a66
--- /dev/null
+++ b/bin/omarchy-hyprland-flag-missing
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Check if a Hyprland flag is currently disabled (missing).
+
+[[ ! -f "$HOME/.local/state/omarchy/flags/hypr/$1.conf" ]]
diff --git a/bin/omarchy-hyprland-flag-present b/bin/omarchy-hyprland-flag-present
new file mode 100755
index 00000000..ea66c717
--- /dev/null
+++ b/bin/omarchy-hyprland-flag-present
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+# Check if a Hyprland flag is currently enabled.
+
+[[ -f "$HOME/.local/state/omarchy/flags/hypr/$1.conf" ]]
diff --git a/bin/omarchy-hyprland-flag-toggle b/bin/omarchy-hyprland-flag-toggle
new file mode 100755
index 00000000..6900bdf7
--- /dev/null
+++ b/bin/omarchy-hyprland-flag-toggle
@@ -0,0 +1,31 @@
+#!/bin/bash
+
+# Toggle permanent Hyprland flags by copying them into a directory that's sourced entirely.
+
+ENABLED_NOTIFICATION=""
+DISABLED_NOTIFICATION=""
+
+while [[ $# -gt 1 ]]; do
+  case $1 in
+    --enabled-notification) ENABLED_NOTIFICATION="$2"; shift 2 ;;
+    --disabled-notification) DISABLED_NOTIFICATION="$2"; shift 2 ;;
+    *) break ;;
+  esac
+done
+
+FLAG_NAME="$1"
+flag="$HOME/.local/state/omarchy/flags/hypr/$FLAG_NAME.conf"
+flag_source="$OMARCHY_PATH/default/hypr/flags/$FLAG_NAME.conf"
+
+if [[ -f $flag ]]; then
+  rm $flag
+  [[ -n $DISABLED_NOTIFICATION ]] && notify-send -u low "$DISABLED_NOTIFICATION"
+elif [[ -f $flag_source ]]; then
+  cp $flag_source $flag
+  [[ -n $ENABLED_NOTIFICATION ]] && notify-send -u low "$ENABLED_NOTIFICATION"
+else
+  echo "Flag not found"
+  exit 1
+fi
+
+hyprctl reload
diff --git a/bin/omarchy-hyprland-monitor-internal-toggle b/bin/omarchy-hyprland-monitor-internal-toggle
index 6e06d81b..3296adb4 100755
--- a/bin/omarchy-hyprland-monitor-internal-toggle
+++ b/bin/omarchy-hyprland-monitor-internal-toggle
@@ -1,29 +1,16 @@
 #!/bin/bash
 
-# Toggle the internal laptop display on/off.
-# Useful when connected to an external monitor and you want to close the lid
-# or just use the external display only.
+# Toggle the internal laptop display on/off using the flag system.
 
-INTERNAL=$(hyprctl monitors all -j | jq -r '.[] | select(.name | startswith("eDP")) | .name')
-
-if [[ -z $INTERNAL ]]; then
-  notify-send -u low "󰍹    No internal display found"
-  exit 1
-fi
-
-DISABLED=$(hyprctl monitors all -j | jq -r --arg m "$INTERNAL" '.[] | select(.name == $m) | .disabled')
-
-if [[ $DISABLED == "true" ]]; then
-  hyprctl keyword monitor "$INTERNAL,preferred,auto,auto"
-  hyprctl dispatch movecursor 0 0
-  notify-send -u low "󰍹    Internal display on"
-else
+if omarchy-hyprland-flag-missing internal-monitor-disable; then
   ACTIVE_COUNT=$(hyprctl monitors -j | jq 'length')
   if [[ $ACTIVE_COUNT -le 1 ]]; then
     notify-send -u low "󰍹    Can't disable the only active display"
     exit 1
   fi
-
-  hyprctl keyword monitor "$INTERNAL,disable"
-  notify-send -u low "󰍹    Internal display off"
 fi
+
+omarchy-hyprland-flag-toggle \
+  --enabled-notification "󰍹    Internal display off" \
+  --disabled-notification "󰍹    Internal display on" \
+  internal-monitor-disable
diff --git a/bin/omarchy-hyprland-window-single-square-aspect-toggle b/bin/omarchy-hyprland-window-single-square-aspect-toggle
index 50ccdac9..b933643b 100755
--- a/bin/omarchy-hyprland-window-single-square-aspect-toggle
+++ b/bin/omarchy-hyprland-window-single-square-aspect-toggle
@@ -1,13 +1,8 @@
 #!/bin/bash
 
-# Check current single_window_aspect_ratio setting
-CURRENT_VALUE=$(hyprctl getoption "layout:single_window_aspect_ratio" 2>/dev/null | head -1)
+# Toggle single-window square aspect ratio using the flag system.
 
-# Parse vec2 output: "vec2: [1, 1]" or "vec2: [0, 0]"
-if [[ $CURRENT_VALUE == *"[1, 1]"* ]]; then
-  hyprctl keyword layout:single_window_aspect_ratio "0 0"
-  notify-send -u low "    Disable single-window square aspect ratio"
-else
-  hyprctl keyword layout:single_window_aspect_ratio "1 1"
-  notify-send -u low "    Enable single-window square aspect"
-fi
+omarchy-hyprland-flag-toggle \
+  --enabled-notification "      Enable single-window square aspect ratio" \
+  --disabled-notification "      Disable single-window square aspect ratio" \
+  single-window-aspect-ratio
diff --git a/config/hypr/hyprland.conf b/config/hypr/hyprland.conf
index 6478d1be..6866a136 100644
--- a/config/hypr/hyprland.conf
+++ b/config/hypr/hyprland.conf
@@ -19,5 +19,8 @@ source = ~/.config/hypr/bindings.conf
 source = ~/.config/hypr/looknfeel.conf
 source = ~/.config/hypr/autostart.conf
 
+# Toggle config flags dynamically
+source = ~/.local/state/omarchy/flags/hypr/*.conf
+
 # Add any other personal Hyprland configuration below
 # windowrule = workspace 5, match:class qemu
diff --git a/default/hypr/flags/flags.conf b/default/hypr/flags/flags.conf
new file mode 100644
index 00000000..a6334225
--- /dev/null
+++ b/default/hypr/flags/flags.conf
@@ -0,0 +1,2 @@
+# This directory is intended for permanent config toggle flags.
+# Do not remove this file (as the directory always needs at least one file).
diff --git a/default/hypr/flags/internal-monitor-disable.conf b/default/hypr/flags/internal-monitor-disable.conf
new file mode 100644
index 00000000..f5458f94
--- /dev/null
+++ b/default/hypr/flags/internal-monitor-disable.conf
@@ -0,0 +1,2 @@
+# Disable the internal laptop monitor
+monitor=eDP-1,disable
diff --git a/default/hypr/flags/single-window-aspect-ratio.conf b/default/hypr/flags/single-window-aspect-ratio.conf
new file mode 100644
index 00000000..b51d0e41
--- /dev/null
+++ b/default/hypr/flags/single-window-aspect-ratio.conf
@@ -0,0 +1,5 @@
+# Avoid overly wide single-window layouts on wide screens
+layout {
+    single_window_aspect_ratio = 1 1
+}
+
diff --git a/install/config/all.sh b/install/config/all.sh
index b09332e6..5ec74701 100644
--- a/install/config/all.sh
+++ b/install/config/all.sh
@@ -22,6 +22,7 @@ run_logged $OMARCHY_INSTALL/config/unmount-fuse.sh
 run_logged $OMARCHY_INSTALL/config/sudoless-asdcontrol.sh
 run_logged $OMARCHY_INSTALL/config/input-group.sh
 run_logged $OMARCHY_INSTALL/config/omarchy-ai-skill.sh
+run_logged $OMARCHY_INSTALL/config/omarchy-config-flags.sh
 run_logged $OMARCHY_INSTALL/config/kernel-modules-hook.sh
 run_logged $OMARCHY_INSTALL/config/powerprofilesctl-rules.sh
 run_logged $OMARCHY_INSTALL/config/wifi-powersave-rules.sh
diff --git a/install/config/omarchy-config-flags.sh b/install/config/omarchy-config-flags.sh
new file mode 100644
index 00000000..c5a46909
--- /dev/null
+++ b/install/config/omarchy-config-flags.sh
@@ -0,0 +1,3 @@
+# Flags are used to toggle certain features on/off in a persistent way
+mkdir -p ~/.local/state/omarchy/flags/hypr
+cp $OMARCHY_PATH/default/hypr/flags/flags.conf ~/.local/state/omarchy/flags/hypr/
diff --git a/migrations/1776410469.sh b/migrations/1776410469.sh
new file mode 100644
index 00000000..a0e4d962
--- /dev/null
+++ b/migrations/1776410469.sh
@@ -0,0 +1,9 @@
+echo "Add flags sourcing to hyprland.conf"
+
+HYPR_CONF=~/.config/hypr/hyprland.conf
+
+source $OMARCHY_PATH/install/config/omarchy-config-flags.sh
+
+if [[ -f $HYPR_CONF ]] && ! grep -q "flags/hypr/\*\.conf" "$HYPR_CONF"; then
+  echo -e "\n# Toggle config flags dynamically\nsource = ~/.local/state/omarchy/flags/hypr/*.conf" >> "$HYPR_CONF"
+fi